Homologsearch: R Package For Identifying Homologous Sequences Between Model And Non-Model Organisms
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2020
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Mark
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Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií
Abstract
In this paper, I present the R package HomologSearch. The package serves for searching similarities between two sequences (protein or nucleotide) in a fasta format. The evaluation is computed using the BLAST algorithm and output is a table of homologous locus tags and genes (if available). The HomologSearch is available in the GitHub repository under the name ‘Jana- Mus/HomologSearch’ and can be installed as a library into the R language.
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Proceedings I of the 26st Conference STUDENT EEICT 2020: General papers. s. 320-324. ISBN 978-80-214-5867-3
https://conf.feec.vutbr.cz/eeict/EEICT2020
https://conf.feec.vutbr.cz/eeict/EEICT2020
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Peer-reviewed
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en
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© Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií