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Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling
(SAGE Publishing, 2017-03-30)
Pragia fontium is one of the few species that belongs to the group of atypical hydrogen sulfide-producing enterobacteria. Unlike other members of this closely related group, P. fontium is not associated with any known host ...
Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics
One of main steps in a study of microbial communities is resolving their composition, diversity and function. In the past, these issues were mostly addressed by the use of amplicon sequencing of a target gene because of ...
Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer
We present a draft genome sequence of Clostridium pasteurianum NRRL B-598. This strain ferments saccharides by two-stage acetone-butanol (AB) fermentation, is oxygen tolerant, and has high hydrogen yields.
Progressive alignment of genomic signals by multiple dynamic time warping
This paper presents the utilization of progressive alignment principle for positional adjustment of a set of genomic signals with different lengths. The new method of multiple alignment of signals based on dynamic time ...
Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation
(BioMed Central, 2016-01-20)
Butanol is currently one of the most discussed biofuels. Its use provides many benefits in comparison to bio-ethanol, but the price of its fermentative production is still high. Genetic improvements could help solve many ...
Characterization of Microbiota Composition and Presence of Selected Antibiotic Resistance Genes in Carriage Water of Ornamental Fish
(Public Library of Science, 2014-08-01)
International trade with ornamental fish is gradually recognized as an important source of a wide range of different antibiotic resistant bacteria. In this study we therefore characterized the prevalence of selected ...
Set of rules for genomic signal downsampling
Comparison and classification of organisms based on molecular data is an important task of computational biology, since at least parts of DNA sequences for many organisms are available. Unfortunately, methods for comparison ...
Complete genome sequence of Pragia fontium 24613, an environmental bacterium from the family Enterobacteriaceae
The complete genome sequence of Pragia fontium 24613 was determined using PacBio RSII, Roche 454 and SOLiD sequencing. A total of 3,579 genes were predicted, including 3,338 protein-coding sequences and 146 pseudogenes. ...
The effect of Benzothiazolone-2 on the expression of Metallothionein-3 in modulating Alzheimer's disease
(Wiley Periodicals, 2017-08-15)
Metallothioneins (MTs) are a class of ubiquitously occurring low-molecular-weight cysteine- and metal-rich proteins containing sulfur-based metal clusters. MT-3 exhibits neuro-inhibitory activity. The possibility to enhance ...
Fast Time-Varying Linear Filters for Suppression of Baseline Drift in Electrocardiographic Signals
(Springer Nature, BioMed Central, 2017-02-07)
Realization of the high-pass (HP) filter is based on a narrow-band low-pass (LP) filter of which output is subtracted from the delayed input. The base of an LP filter is an extremely low computational cost Lynn’s filter ...