Zobrazují se záznamy 1-10 z 14
Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics
One of main steps in a study of microbial communities is resolving their composition, diversity and function. In the past, these issues were mostly addressed by the use of amplicon sequencing of a target gene because of ...
Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing
The aims of this study were to determine the microbial community in five rivers in the proximity of a city in the Czech Republic using 454-pyrosequencing, as well as to assess seasonal variability over the course of 1 year ...
Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer
We present a draft genome sequence of Clostridium pasteurianum NRRL B-598. This strain ferments saccharides by two-stage acetone-butanol (AB) fermentation, is oxygen tolerant, and has high hydrogen yields.
Progressive alignment of genomic signals by multiple dynamic time warping
This paper presents the utilization of progressive alignment principle for positional adjustment of a set of genomic signals with different lengths. The new method of multiple alignment of signals based on dynamic time ...
Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation
(BioMed Central, 2016-01-20)
Butanol is currently one of the most discussed biofuels. Its use provides many benefits in comparison to bio-ethanol, but the price of its fermentative production is still high. Genetic improvements could help solve many ...
Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia
(Public Library of Science, 2014-10-16)
Poultry meat is the most common protein source of animal origin for humans. However, intensive breeding of animals in confined spaces has led to poultry colonisation by microbiota with a zoonotic potential or encoding ...
Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life
(Public Library of Science, 2014-12-12)
In this study we characterised the development of caecal microbiota in egg laying hens over their commercial production lifespan, from the day of hatching until 60 weeks of age. Using pyrosequencing of V3/V4 variable regions ...
Set of rules for genomic signal downsampling
Comparison and classification of organisms based on molecular data is an important task of computational biology, since at least parts of DNA sequences for many organisms are available. Unfortunately, methods for comparison ...
Complete genome sequence of Pragia fontium 24613, an environmental bacterium from the family Enterobacteriaceae
The complete genome sequence of Pragia fontium 24613 was determined using PacBio RSII, Roche 454 and SOLiD sequencing. A total of 3,579 genes were predicted, including 3,338 protein-coding sequences and 146 pseudogenes. ...
Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling
(SAGE Publishing, 2017-03-30)
Pragia fontium is one of the few species that belongs to the group of atypical hydrogen sulfide-producing enterobacteria. Unlike other members of this closely related group, P. fontium is not associated with any known host ...