My_Umi_Tool: Processing Of Unique Molecular Identifiers Without Mapping To A Reference Genome
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The presented paper describes a novel algorithm for processing unique molecular identifiers (UMIs) without mapping to a reference genome. For the past few years, there has been a rapid rise in the use of sequencing technologies and progress in bioinformatics tools. However, available tools for processing UMIs are usually relative computationally demanding and time-consuming which led us to design and develop a new algorithm as well as to implement some available software to provide an effective estimation of the total number of unique molecules. My_UMI_tool performs four major steps: preprocessing of an input file, clustering by UMIs, clustering by sequence similarity, and marking duplicates to generate final file.
Document typePeer reviewed
Document versionFinal PDF
SourceProceedings II of the 26st Conference STUDENT EEICT 2020: Selected Papers. s. 76-79. ISBN 978-80-214-5868-0
- Student EEICT 2020