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Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics
(Elsevier, 2016-12-05)
One of main steps in a study of microbial communities is resolving their composition, diversity and function. In the past, these issues were mostly addressed by the use of amplicon sequencing of a target gene because of ...
Tissue perfusion modelling in optical coherence tomography
(BioMed Central, 2017-02-08)
Background Optical coherence tomography (OCT) is a well established imaging technique with different applications in preclinical research and clinical practice. The main potential for its application lies in the possibility ...
Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population
(PLOS, 2019-08-13)
Studying bacterial population diversity is important to understand healthcare associated infections’ epidemiology and has a significant impact on dealing with multidrug resistant bacterial outbreaks. We characterised the ...
Registration of retinal sequences from new video-ophthalmoscopic camera
(BioMed Central, 2016-05-20)
Analysis of fast temporal changes on retinas has become an important part of diagnostic video-ophthalmology. It enables investigation of the hemodynamic processes in retinal tissue, e.g. blood-vessel diameter changes as a ...
The extraction of the new components from electrogastrogram (EGG), using both adaptive filtering and electrocardiographic (ECG) derived respiration signal
(Springer, 2015-06-23)
Electrogastrographic examination (EGG) is a noninvasive method for an investigation of a stomach slow wave propagation. The typical range of frequency for EGG signal is from 0.015 to 0.15 Hz or (0.015–0.3 Hz) and the signal ...
Electrospinning over Solvent Casting: Tuning of Mechanical Properties of Membranes
(Nature Publishing, 2018-03-22)
We put forth our opinion regarding the enhanced plasticity and modulation of mechanical properties of polymeric films obtained through electrospinning process in this article. In majority of the pharmaceutical, biomedical, ...
Bipartite Graphs for Visualization Analysis of Microbiome Data
(Libertas Academica, 2016-05-31)
Visualization analysis plays an important role in metagenomics research. Proper and clear visualization can help researchers get their first insights into data and by selecting different features, also revealing and ...
A Comparative Analysis of Methods for Evaluation of ECG Signal Quality after Compression
(Hindawi, 2018-07-18)
The assessment of ECG signal quality after compression is an essential part of the compression process. Compression facilitates the signal archiving, speeds up signal transmission, and reduces the energy consumption. ...
Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq
(BioMed Central, 2018-05-30)
Background Thinning supplies of natural resources increase attention to sustainable microbial production of bio-based fuels. The strain Clostridium beijerinckii NRRL B-598 is a relatively well-described butanol producer ...
Progressive alignment of genomic signals by multiple dynamic time warping
(Elsevier, 2015-11-21)
This paper presents the utilization of progressive alignment principle for positional adjustment of a set of genomic signals with different lengths. The new method of multiple alignment of signals based on dynamic time ...