Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer

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dc.contributor.authorHeřmánková, Kristýnacs
dc.contributor.authorKouřilová, Xeniecs
dc.contributor.authorPernicová, Ivacs
dc.contributor.authorBezdíček, Matějcs
dc.contributor.authorLengerová, Martinacs
dc.contributor.authorObruča, Stanislavcs
dc.contributor.authorSedlář, Karelcs
dc.coverage.issue12cs
dc.coverage.volume13cs
dc.date.accessioned2022-01-13T15:57:05Z
dc.date.available2022-01-13T15:57:05Z
dc.date.issued2021-12-15cs
dc.description.abstractTepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain Tepidimonas taiwanensis LMG 22826T was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs) – renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587bp long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826T an ideal candidate for further genome engineering as a bacterium with high biotechnological potential.en
dc.formattextcs
dc.format.extent1-5cs
dc.format.mimetypeapplication/pdfcs
dc.identifier.citationGENOME BIOL EVOL. 2021, vol. 13, issue 12, p. 1-5.en
dc.identifier.doi10.1093/gbe/evab280cs
dc.identifier.issn1759-6653cs
dc.identifier.other175376cs
dc.identifier.urihttp://hdl.handle.net/11012/203302
dc.language.isoencs
dc.publisherOxford University Presscs
dc.relation.ispartofGENOME BIOL EVOLcs
dc.relation.urihttps://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evab280/6462190cs
dc.rightsCreative Commons Attribution-NonCommercial 4.0 Internationalcs
dc.rights.accessopenAccesscs
dc.rights.sherpahttp://www.sherpa.ac.uk/romeo/issn/1759-6653/cs
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/cs
dc.subjectTepidimonas taiwanensisen
dc.subjectpolyhydroxyalkanoatesen
dc.subjecthybrid assemblyen
dc.subjectOxford Nanopore Technologiesen
dc.subjectfunctional annotationen
dc.subjectalkaline proteaseen
dc.titleComplete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Produceren
dc.type.driverarticleen
dc.type.statusPeer-revieweden
dc.type.versionpublishedVersionen
sync.item.dbidVAV-175376en
sync.item.dbtypeVAVen
sync.item.insts2022.07.04 16:54:14en
sync.item.modts2022.07.04 16:14:40en
thesis.grantorVysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií. Ústav biomedicínského inženýrstvícs
thesis.grantorVysoké učení technické v Brně. Fakulta chemická. Ústav chemie potravin a biotechnologiícs
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